Blur
The Blur command applies a box (mean) filter to the image. Every pixel is replaced by the average intensity of its surrounding neighbourhood.
When to use
Use Blur as a fast, lightweight noise-reduction step before segmentation. For better edge preservation, consider Gaussian Blur instead.
Parameters
| Parameter | Description |
|---|---|
| Kernel size | Side length of the averaging kernel in pixels (must be odd; range 3–27) |
Kernel size guidance
- 3–5 — subtle smoothing, preserves fine structure
- 7–11 — moderate noise reduction for typical fluorescence images
- 13+ — heavy smoothing; fine structures may be lost
Notes
In image processing, a kernel (convolution matrix) is a small matrix applied to each pixel and its neighbours. A box blur kernel fills every element with 1/N, replacing each pixel with the neighbourhood mean.